TRAINING PROGRAM

TRAINING PROGRAM

15 DAYS / 1 MONTH / 2 Month

1.Bioinformatics - Basic

2.Bioinformatics - Advance

3.Biological Database.

  • Biological Database
  • Introduction of biological data, Nucleic acid and Proteins
  • Data retrieval and Databases (NCBI, EMBL, GeneCard, UniProt).
  • Bioinformatics tools, server, pipelines and web resources for Beginner.
  • Database and Search Tools
    • Primary Database
    • Nucleotide sequence database
    • Genomic DNA Sequence
    • Expressed sequence Tag(EST) Sequences.
    • Genome sequence Tag (GST) Sequence.
    • Organellar DNA Sequence.

4.Structural Bioinformatics

  • Structural Bioinformatics - Introduction
  • Structural Bioinformatics Perspective in Pharmacy Informatics and Biomedical Informatics, Genomics and Proteomics
  • Structure prediction (secondary and tertiary): Mfold, RNA fold, PDB.
  • Protein structure: prediction PDB, PDBe: Exploring a Protein Data Bank (PDB) entry Protein structure alignment.
  • Structural visualization
  • Structure classification
  • Structural alignment and analysis ( Rasmol, SWISS-PDB viewer and Protein explorer.

5.Open Reading Frame & Primer Designing

  • Open Reading Frame – Introduction
  • DNA Translation
  • RNA Translation
  • Translation Parameter
  • Introduction of Primer and Primer Designing
  • Software of Primer Designing, Hairpin Formation, Primer Database,
  • ORF Finder
  • ORF Investigator
  • Genetic Code

6.INDUSTRIAL MICROBIOLOGY AND ENZYMOLOGY

  • Industrial Microbiology.
  • Enzymology
  • Role of Microbes in industrial product.
  • Growth of Microorganism in controlled environment.
  • Study of Microorganism for strain improvement.
  • Overview of enzymology and microbial therapeutics enzymes.
  • Enzymes in biotechnology.
  • Microbial enzymes - Production and purification.
  • Application of microbial enzymes.
  • Review Paper writing.
  • Research Paper Publication.

7. Molecular Docking and Visualization

  • Molecular Docking
  • Types of docking
  • Server and tools for molecular docking and visualization.
  • AUTODOCK,
  • Fundamentals of Drug discovery and development,
  • Target Discovery,
  • Lead Identification ,
  • Lead Optimization and Validation,
  • Pharmacophore Modeling

8. CADD (Computer Aided Drug Designing)

  • Computer Aided Drug Designing(PharmacophoreDesign).
  • Genomics and Proteomics (Biological Sample).
  • Databases (GeneDB,PUBCHEM,DRUGBANK,RCSB,ZINC).
  • Structure Based Drug Design (Protein structure Validation).
  • Grid Parameter.
  • Docking Score Validation.
  • Active site Identification using PyMOL.

9. GWAS (Genome Wide Association Studies) .

  • Overview on GWAS.
  • Bioinformatics and Genomics
  • Database and Tools(NCBI,BLAST,PDB etc)
  • Blast understanding for large Scale genomic data
  • Genome Annotation
  • Overview of NGS/GWAS
  • Overview on GWAS.
  • Bioinformatics and Genomics
  • Database and Tools(NCBI,BLAST,PDB etc)
  • Blast understanding for large Scale genomic data
  • Genome Annotation
  • Overview of NGS/GWAS

10.Introduction of Interactive Metagenomics

  • Introduction of Interactive Metagenomics
  • NCBI taxonomy tree
  • Identification of Methylated residue
  • Annotation of all CpGA region
  • KEGG Pathway
  • Methylation Sequence Analysis
  • MEGAN Visualization
  • Annotation of Metagenomics sequence database
  • Command line Tools

11. CAS-9 TECHNOLOGY FOR GENE EDITING

  • Scope and application of Molecular Biology
  • Computational Biology & Bioinformatics.
  • Overview of Genetic Engineering
  • Introduction and tools of Genome-editing.
  • chronological perception of CRISPR/Cas Technology. gRNA, CAS9, and CAS-FISH.
  • Application of CRISPR/Cas9 Technology.
  • Scope and Challenges in CRISPR/Cas9 Technology.
  • CRISPR/Cas9 System (CRISPR on-target and off-target analysis).
  • CRISPR Technology and Personalized Medicine.
  • Next Generation Technology Approach for CRISPR Technology.
  • Ethical issues related to CRISPR Technology.
  • Review Paper writing.
  • Paper Publication.

12. NGS – ( Next Generation Sequencing)

  • Overview of NGS
  • Data Retrieval And Data type.
  • Genomic Bioinformatics
  • Genome Visualization
  • Database and Tools
  • Data Retrieval and Data type
  • Alignment read using reference Genome( COBALT, Tophat/Star).
  • Genomic Bioinformatics
  • Pathway and Gene Ontology
  • Genome Variant Detection

13. BIOPYTHON - BASIC

  • Biopython - Introduction
  • Installation of Biopython.
  • Operation in Sequence object
  • Translation of Sequence
  • Handling Blast output file using Biopython
  • Finding percent GC of Sequence
  • Parsing Biologoical file format (Fasta,Genebank).
  • Understanding of Biopython body structure
  • Genome Visualization using Biopython
  • DNA/ RNA Proteins sequence operation (Reverse complement of DNA string)

14. Skill Development Training Program

  • Research Proposal.
  • Key components for research work.
  • Skills of scientific information to write a report.
  • Journal & Paper publication process.
  • Concept of Impact factor and citation index.
  • Scientific approach to write a review paper.
  • Evaluation and submission of research paper for publication.
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