CORE PROGRAMMING LANGUAGES

  • PYTHON.
  • BIOPYTHON.
  • BIO R.
  • PERL.
  • JAVA.
  • DATA SCIENCE.
  • CANCER INFORMATICS .
  • ARTIFICIAL INTELIGENCE In Bioinformatics .
  • MACHINE LEARNING .

Bio Cloud Computing Platform

  • Bio Cloud Computing platform Overview
  • Bio Cloud Computing
  • Cloud Console, Shell
  • Bio Cloud Computing Mobile App
  • Bio Cloud Computing Development Tools
  • Bio Cloud Computing Development Tools - Cloud SDK, Repositories, Plugins
  • Bio Cloud Computing : Compute Service
  • Introduction to Bio Cloud Compute Service - Compute, App,
  • Container & Functions
  • Bio Cloud Compute Engine
  • Bio Cloud Compute Engine - Machine Types
  • Bio Cloud Compute Engine - Other Concepts
  • Bio Cloud Compute Engine - Linux Machine Demo
  • Bio Cloud Compute Engine - Windows Machine Demo
  • Load Balancing & Auto Scaling Overview
  • Load Balancer, Auto Scaling & High Availability illustrations
  • Bio Cloud App Engine - GAE
  • Bio Cloud Container Engine - GKE
  • Bio Cloud - Cloud Functions - GCF
  • Bio Cloud Computing : Storage and Database Service
  • Bio Cloud Computing : Storage and Database Service Overview
  • Bio Cloud Persistent Disk - PD
  • Bio Cloud Computing SQL
  • Bio Cloud Computing SQL : MySQL
  • Bio Cloud Computing SQL : PostgreSQL
  • Bio Cloud Computing Spanner
  • Bio Cloud DataStore
  • Identity and Security Management
  • Bio Cloud Computing : Identity & Access Management
  • Bio Cloud Computing Security
  • Bio Cloud Computing : Cloud Security Scanner
  • Bio Cloud Computing Platform Management Tools
  • Introduction to Management Tools
  • StackDriver Monitoring
  • StackDriver Logging
  • Bio Cloud Computing Platform BigData Offerings
  • Bio Cloud BigData Solutions
  • Bio Cloud Bio Python Machine Learning Offerings
  • Bio Cloud AI and Machine Learning Solutions
  • Designing Bio Cloud Informatics Applications

Bio Java Module

  • Sequence basics
  • Symbols and Symbol Lists
  • Sequences and Features
  • Sequence I/O basics
  • Changeability basics
  • Change Event overview
  • Change Event example using Distribution objects
  • Implementing Changeable
  • Blast-like parsing (NCBI Blast, WU-Blast, HMMER)
  • Blast-like Parsing Cook Book
  • Blast2HTML Example Application
  • Walkthrough of one of the dynamic programming examples
  • Installing BioSQL

BioPerl Module

  • Align the Sequence using Local Blast
  • Gene from Genscan
  • Protein Sequence Generation
  • Count Start and Stop Codons in a Sequence
  • Reverse Complement of DNA
  • DNA Fragments Transcription
  • DNA Mutation
  • Check File Extensions
  • Search String in Sequence
  • Total and Average length of Proteins in files
  • Reading Protein Sequence From Files
  • Sequence into a file
  • Exploratory Data Analysis
  • Bio Cloud Computing Essentials
  • Inferential Statistics
  • Hypothesis Testing

BioPython Clinical Pharmacology

  • PYTHON.
  • Drug Receptors & Pharmacodynamics analysis using BioPython
  • Ligand Regulated Transmembrane
  • Enzymes Including Receptor Tyrosine Kinases
  • G Proteins & Second Messengers
  • Pharmacokinetics & Pharmacodynamics
  • Rational Dosing
  • Drug Biotransformation
  • MICROSOMAL MIXED FUNCTION
  • OXIDASE SYSTEM & PHASE I REACTIONS
  • HUMAN LIVER P450 ENZYMES Analysis and Visualization
  • Enzyme Inhibition
  • Development & Regulation of Drugs
  • NONADRENERGIC, NONCHOLINERGIC
  • NEURONS BioAI Understanding
  • Keras Genetic Algorithm
  • Cholinoceptor-Activating & Cholinesterase-Inhibiting Drugs
  • BioML Regression Cholinoceptor Blocking Drugs
  • BioML Regression Adrenoceptor Agonists
  • Sympathomimetic Drugs

BIOR Programming courses

  • PYTHON.
  • Introduction to R-Programming
  • Features of R
  • Interactive Mode
  • Hello world
  • Data type in R
  • Reading,writing and deleting files using R
  • R packages
  • Package installation

CURRENT RESEARCH TOPIC IN BIOINFORMATICS

  • Artificial intelligence & Machine learning
  • Rna-seq analysis (equally relevant along with next-generation sequencing techniques)
  • Evolutionary studies /Phylogenetic Analysis
  • Genomics, transcriptomics, and proteomics
  • NGS
  • GWAS program
  • Computer aided drug designing program

NGS MODULES

Advanced Bioinformatics

  • Introduction to Bioinformatics
  • Understanding Genomics Bioinformatics
  • Databases & tools (NCBI,UCSC,BLAST,BLAT etc)
  • Standalone BLAST Understanding for large scale genomic data handaling
  • Gene Prediction
  • Genome Annotation
  • Genome Vizualization
  • Basics of Programming (Python)

RNASeq Data Analysis

  • Overview of NGS & detailed understanding
  • Data Retrieval (NCBI SRA) & Data types
  • Read Quality Check (FastQC)
  • Alignment of reads using reference Genome
  • Visualization of mapped reads
  • Gene Expression Quantification
  • Differential expression analysis
  • Pathway & Gene ontology enrichment analysis
  • Pathway Network Analysis using KEGG Mapper tool for all DEG genes
  • Basics on R programming

Why People Talk About BPRI?

  • I am a B. tech3rd year student of Biotechnology from Manipal Institute of Technology, MAHE, Karnataka.Being interested in bioinformatics and searching for a good bioinformatics professor I got know about Dr. Uma Kumari ma’am from New Delhi. Getting interested in her work I approached to her and got the opportunity to get a training on Bioinformatics. Dr. Kumari is a professor of dedication and a scientist of most innovative thoughts. Initially she introduced me about relevance of informatics and biology in present context. While training under Dr. Kumari I not only got to know more about the subject from basics but also got know its application with an easy and scientific approach. She has a unique style of approaching students with an understanding of student’s perception towards a subject and then explaining the topics as per his/her capability. I am honored to train under ma’am and most importantly her friendly nature makes me highly interested on this area of Biotechnology. She gave me the strength to take the next steps toward my dream of studying Bioinformatics. I’m so grateful to her.
    Abhradeep Roy
    MAHE (Manipal)
  • “Before coming under the guidance of Uma ma’am, I didn’t quite understand the concept of bioinformatics. After I came under her guidance, bioinformatics felt like a walk in the park. She made it so easy for me to understand the various concepts of the subject. The practical lessons too, were easy to understand and highly engaging. Uma ma’am is very patient and calm. She makes bioinformatics a highly interesting and fun subject. I would highly recommend her for any training related to bioinformatics.”
    Varshini Satish
    D Y PATIL MUMBAI
  • Uma ma'am has been one of the kindest and sweetest professionals that I have worked under. She has been very supportive of me and explained me every little topic in detail when she was my guide in the online internship program . With being composed teacher, she has helped me in every way possible with my academic life.
    Shivangi
    Amity University
  • I have completed my one month training program under the guidance of Dr. Uma Kumari and I learned a lot from her. Her knowledge of bioinformatics is really vast and deep. Her teaching method is really good. I have also written a research paper under the guidance of ma'am and during that time , ma'am provides me full support and guidance.
    Deevanshi Gupta
    (NIET) Noida
  • Respected maam I would like to acknowledge the training session done under Dr Uma Kumari on basic and advanced tool use in bioinformatics. 1 months course contains the introduction of various tools which are the key element for the bioinformatics field. also, the ecosystem provided by ma'am helped me a lot and resolve my doubt in the easiest understanding way. at every pebble of the journey of my course, she tries to boost my confidence up to such a level which helps to give me fruitful results and help to build my career in the right direction.
    Tanishka Uttam
    Delhi
  • Thank you so much for such a great session! I have completed my 3 month summer project and it has been a great experience. Uma Ma'am is a very helpful who puts a lot of thought in project, her lessons were engaging, useful, and she was very patient with everyone, always encouraging us to try. The instructor  has great experiences to share that will help you apply the lessons to our situation. Anyone interested in learning from basic to advance they can join without any doubt.
    Nitika Kumari
    Haryana
  • I express my gratitude to Mrs.Uma Kumari for guiding me throughout my project.She is a knowledgeable individual who imbibes the same among all her students.Her classes were easy to follow with clear and crisp material.I am grateful for her guidance.
    Amritha Sreenath
    Karunya University. - Coimbatore
  • Dr Uma Maam has unique method of teachings which makes her classes both enjoyable and challenging. Her courses focus core subjects rather than an summary, which gives us an enhanced understanding. She encourages students and is patient in serving all the class session to superior understand the practical session. I feel very lucky to have found the finest teacher. I'm sure you won't be disappointed with her great leaning and skills
    Sakshi
    Integral University -Lucknow
  • Dr. Uma Ma'am is a great teacher and I recommend her for Training and Project , She is very patience and it's very comfortable to practice practical's and theories ,she went so smoothly that it did not make me difficult to learn . I recommend her greatly
    SHAKSHI SINGH
    ST. XAVIER'S COLLEGE ,RANCHI
  • I have completed my 3 month summer project and it has been a great experience. Uma Ma'am is a very helpful who puts a lot of thought in project, her lessons were engaging, useful, and she was very patient with everyone, always encouraging us to try. Anyone interested in learning from basic to advance they can join without any doubt.
    Devendra,
    Haryana 
  • I completed my 3 month dissertation program in bioinformatics under the mentorship and Guidance of Dr. Uma ma'am. I want to express my gratitude to Dr. Uma ma'am ,who unfolded the era of technology in context of biology for me. The lessons from the basics to advanced were informative, application based and opportunistic to develop a keen interest in the field. The way of her teaching is easy and practice based. I thoroughly enjoyed my dissertation and want to pursue my career in bioinformatics research all thanks to ma'am for Emboldening me.
    Stuti Choudhary
    M.sc Biotech ,Gwalior (MP)
  • The way Dr Uma ma'am teaching is light and delightful. She has a great grip over all concepts of Bioinformatics. Wanna express my Gratitude to senior scientist Dr Uma Ma'am .Her teaching method were engaging, easy to learn. Feels so grateful after meet her. I learn basic techniques of Bioinformatics under her guidance and my experience is amazing. Her dedication made me more confident and encourage me to learn. Thankyou Dr Uma Ma'am!
    Chhavi Rawat
    Banasthali Vidyapith ,Rajasthan
  • My name is Navjot Kaur, and I am a postgraduate research student from Punjab. Since January 2022, I've been working on a six-month research project in the field of bioinformatics under the supervision of Dr. Uma Kumari. I'm delighted to say that Dr. Uma is an excellent supervisor in both technical and non-technical aspects. Working on a project with her has been a great experience since I've learned a lot of new things that I was previously unaware of. It is only achievable due to my mentor's significant experience in the subject. Aside from that, she is very cooperative and her lectures are quite engaging and informative. The most essential factor is that each batch has 3 to 4 students, which allows us to clear our doubts simply in class without any fuss.
    Navjot Kaur virk
    Mata Gujri College Sirhind PUNJAB
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